Containers and Virtual Machines

birc-bids

Docker and Singularity

This Docker/Singularity container comes packed with various BIDS conversion utilities, offering a portable solution for dataset conversion and management.

boutiques-dcm2niix

Docker

Boutiques-dcm2niix provides a Dockerfile for installing and validating dcm2niix, offering a containerized approach to DICOM conversion.

fMRIprep.dcm2niix

Docker and CLI

Fmriprep.dcm2niix is tailored for converting DICOM format to NIfTI, supporting preprocessing workflows for functional MRI data.

neurodocker

Docker

Neurodocker includes dcm2niix as part of its functionality to generate custom Dockerfiles with specific versions of neuroimaging software, simplifying the deployment of neuroimaging tools.

qsm

Docker and Singularity

QSM software utilizes dcm2niix for image conversion, supporting advanced quantitative susceptibility mapping analyses in neuroimaging research.

reproin

Docker and Singularity

Reproin is a setup for the automatic generation of shareable, version-controlled BIDS datasets from MR scanners, using dcm2niix to streamline the conversion process.

sci-tran dcm2niix

Docker

Sci-tran dcm2niix is a Flywheel Gear (docker) that integrates dcm2niix within the Flywheel platform, facilitating DICOM conversion in a cloud-based neuroimaging research environment.